Updated June 16, 2026 · 5 min read
Self-employed people owe two different federal taxes on the same income, and confusing them is the #1 reason 1099 workers get a nasty surprise at filing. Self-employment (SE) tax is a flat 15.3% that funds Social Security and Medicare — it replaces the FICA that an employer would normally split with you. Federal income tax is separate, charged at your marginal bracket rate on your profit. You owe *both*, but the good news is you only pay SE tax on 92.35% of profit and you can deduct half of it.
| Self-employment tax | Federal income tax | |
|---|---|---|
| What it funds | Social Security + Medicare | General federal budget |
| Rate | 15.3% flat (12.4% SS + 2.9% Medicare) | 10%–37% marginal brackets |
| What it's charged on | 92.35% of net profit | Profit minus deductions & credits |
| Social Security cap | 12.4% portion stops at $184,500 (2026) | No cap |
| Deductions that lower it | Business expenses only | Standard deduction, half of SE tax, QBI |
As an employee, you pay 7.65% FICA and your employer quietly pays a matching 7.65%. When you're self-employed, you are both — so you pay the full 15.3% yourself. It breaks down as 12.4% for Social Security (only on the first $184,500 of net earnings in 2026) and 2.9% for Medicare (on all of it, with an extra 0.9% above $200,000).
Two breaks soften it: SE tax is calculated on only 92.35% of your net profit, and half of the SE tax is deductible against your income tax. So the headline 15.3% is really closer to ~14.1% of profit, and part of that comes back via a lower income-tax bill.
On top of SE tax, your business profit is ordinary income subject to the same federal brackets as a salary. But it's taxed on a smaller number: you subtract the standard deduction, the deductible half of your SE tax, and — for most freelancers — the 20% QBI deduction before applying the brackets. That's why two people with the same gross 1099 income can owe very different income tax.
How $80,000 of income is taxed — single filer, 2026 brackets
| Rate | Income taxed here | Tax |
|---|---|---|
| 10% | $12,400 | $1,240 |
| 12% | $38,000 | $4,560 |
| 22% | $13,500 | $2,970 |
Total federal income tax: $8,770. Your marginal rate is 22% (the top bracket), but your effective rate is just 11.0% — because only the top slice is taxed at the top rate.
A freelancer with $80,000 of profit owes roughly $11,300 in self-employment tax *and* federal income tax on top — but the income-tax side is reduced by the standard deduction, half the SE tax, and QBI. Add them and a typical single filer keeps in the low-to-mid 70s percent of profit before state tax.
No. They're two separate federal taxes. Self-employment tax is a flat 15.3% that funds Social Security and Medicare (your replacement for employer-split FICA). Federal income tax is charged separately at your marginal bracket rate on your profit. Self-employed people owe both.
Because you pay both halves of FICA yourself (15.3% self-employment tax) plus regular income tax, and nothing is withheld from your pay during the year. Employees only see their 7.65% half and have taxes withheld automatically.
Only business expenses reduce the profit that SE tax is based on. Deductions like the standard deduction, QBI, and retirement contributions lower your income tax but not your self-employment tax. Half of the SE tax you pay is itself deductible against income tax.
15.3% — 12.4% for Social Security on up to $184,500 of net earnings, plus 2.9% for Medicare on all net earnings. It's applied to 92.35% of your net profit.
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